Tuxedo: Difference between revisions
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__NOTOC__ | |||
[[Category:Software]][[Category:Bioinformatics]] | |||
Tuxedo is a combination of three different programs: | Tuxedo is a combination of three different programs: | ||
* | * [[Bowtie]] - [http://bowtie-bio.sourceforge.net/index.shtml Bowtie Website] | ||
* tophat | * tophat - [http://tophat.cbcb.umd.edu/ Tophat Website] | ||
* | * [[Cufflinks]] - [http://cufflinks.cbcb.umd.edu/ Cufflinks Website] | ||
See the respective program page for usage information or run | |||
module spider program | |||
where ''program'' is bowtie, tophat or cufflinks. | |||
These programs are all installed | ==Location== | ||
These programs are all installed in: | |||
/apps/tuxedo/bowtie | /apps/tuxedo/bowtie | ||
/apps/tuxedo/tophat | /apps/tuxedo/tophat | ||
/apps/tuxedo/cufflinks | /apps/tuxedo/cufflinks | ||
==Libraries== | ==Libraries== | ||
Revision as of 20:54, 15 November 2011
Tuxedo is a combination of three different programs:
- Bowtie - Bowtie Website
- tophat - Tophat Website
- Cufflinks - Cufflinks Website
See the respective program page for usage information or run
module spider program
where program is bowtie, tophat or cufflinks.
Location
These programs are all installed in:
/apps/tuxedo/bowtie /apps/tuxedo/tophat /apps/tuxedo/cufflinks
Libraries
Samtools also needs to be installed on the system for tophat to work. They are currently installed here:
/apps/tuxedo/samtools-0.1.16