Difference between revisions of "RiboPicker"
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Revision as of 14:58, 10 November 2011
Description
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The riboPicker tool can be used to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface.
Template:App Location
Installed Versions
- 0.4.2
Running the application using modules
To use ribopicker with the environment modules system at HPC the following commands are available:
Get module information for ribopicker:
$module spider ribopicker
Load the prerequisite perl module:
$module load perl
Load the application module:
$module load ribopicker
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_RIBOPICKER_DIR - directory where ribopicker is located.
- HPC_RIBOPICKER_BIN - executable directory
ribopicker module depends on the perl module, so module load perl first.