Difference between revisions of "RiboPicker"
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Moskalenko (talk | contribs) (Created page with "__NOTOC__ __NOEDITSECTION__ Category:Software <!-- ######## Template Configuration ######## --> <!--Edit definitions of the variables used in template calls Required variab...") |
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$module spider {{#var:app}} | $module spider {{#var:app}} | ||
{{#if: {{#var:intel}}|Load Intel compiler: {{#tag:pre|$module load intel/{{#var:intel}}}}|}}{{#if: {{#var:mpi}}|Load MPI implementation: {{#tag:pre|$module load {{#var:mpi}}}}|}} | {{#if: {{#var:intel}}|Load Intel compiler: {{#tag:pre|$module load intel/{{#var:intel}}}}|}}{{#if: {{#var:mpi}}|Load MPI implementation: {{#tag:pre|$module load {{#var:mpi}}}}|}} | ||
| + | Load the prerequisite perl module: | ||
| + | $module load perl | ||
Load the application module: | Load the application module: | ||
$module load {{#var:app}} | $module load {{#var:app}} | ||
Revision as of 14:57, 10 November 2011
Description
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The riboPicker tool can be used to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface.
Template:App Location
Installed Versions
- 0.4.2
Running the application using modules
To use ribopicker with the environment modules system at HPC the following commands are available:
Get module information for ribopicker:
$module spider ribopicker
Load the prerequisite perl module:
$module load perl
Load the application module:
$module load ribopicker
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_RIBOPICKER_DIR - directory where ribopicker is located.
- HPC_RIBOPICKER_BIN - executable directory
ribopicker module depends on the perl module, so module load perl first.