Raven: Difference between revisions
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Created page with "Category:SoftwareCategory:assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|raven}} |{{#vardefine:url|https://github.com/lbcb-sci/raven}} <!--CONFIGURATION:..." |
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==Environment Modules== | ==Environment Modules== | ||
Users should create their own environments for this application. See below for additional information. | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: exe}}|==Additional Information== | {{#if: {{#var: exe}}|==Additional Information== | ||
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==Installation== | |||
Building the application (with CUDA support): | |||
<code>module load conda | |||
mamba create -yp /blue/your/install/path/raven/1.8.3 python zlib gcc cmake doxygen boost thrust=1.9.8 | |||
mamba activate /blue/your/install/path/raven/1.8.3 | |||
module load cuda | |||
git clone https://github.com/lbcb-sci/raven && cd raven | |||
cmake -S ./ -B./build -DRAVEN_BUILD_EXE=1 -DCMAKE_BUILD_TYPE=Release -Dracon_enable_cuda=Yes --install-prefix=/blue/your/install/path/raven/1.8.3 | |||
cmake --build build | |||
cmake --install ./build</code> | |||
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Revision as of 21:12, 20 November 2023
Description
Raven is a de novo genome assembler for long uncorrected reads.
Environment Modules
Users should create their own environments for this application. See below for additional information.
Installation
Building the application (with CUDA support):
module load conda
mamba create -yp /blue/your/install/path/raven/1.8.3 python zlib gcc cmake doxygen boost thrust=1.9.8
mamba activate /blue/your/install/path/raven/1.8.3
module load cuda
git clone https://github.com/lbcb-sci/raven && cd raven
cmake -S ./ -B./build -DRAVEN_BUILD_EXE=1 -DCMAKE_BUILD_TYPE=Release -Dracon_enable_cuda=Yes --install-prefix=/blue/your/install/path/raven/1.8.3
cmake --build build
cmake --install ./build