Difference between revisions of "Gimmemotifs"
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GimmeMotifs is an analysis framework for transcription factor motif analysis written in Python. It contains command-line scripts to predict de novo motifs, scan for known motifs, identify differential motifs, calculate motif enrichment statistics, plot sequence logos and more. In addition, all this functionality is available from a Python API. | GimmeMotifs is an analysis framework for transcription factor motif analysis written in Python. It contains command-line scripts to predict de novo motifs, scan for known motifs, identify differential motifs, calculate motif enrichment statistics, plot sequence logos and more. In addition, all this functionality is available from a Python API. | ||
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| + | ==Usage== | ||
| + | Loading the module: <code>ml gimmemotifs</code> | ||
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| + | Using the executable: <code>gimme -h</code> | ||
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Latest revision as of 15:41, 30 June 2023
Description
GimmeMotifs is an analysis framework for transcription factor motif analysis written in Python. It contains command-line scripts to predict de novo motifs, scan for known motifs, identify differential motifs, calculate motif enrichment statistics, plot sequence logos and more. In addition, all this functionality is available from a Python API.
Usage
Loading the module: ml gimmemotifs
Using the executable: gimme -h
Environment Modules
Run module spider gimmemotifs to find out what environment modules are available for this application.
System Variables
- HPC_GIMMEMOTIFS_DIR - installation directory