Difference between revisions of "Varpipe-wgs"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:SequqncingCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|varpipe-wgs}} |{{#vardefine:url|https://github.com/CDCgov/N...") |
|||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * | + | * HPC_VARPIPEWGS_DIR - installation directory |
| − | * | + | * HPC_VARPIPEWGS_BIN - executable directory |
* HPC_SINGULARITY_IMAGE - singularity image | * HPC_SINGULARITY_IMAGE - singularity image | ||
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 16:22, 15 March 2023
Description
This repository contains an analysis pipeline developed to characterize WGS output
Environment Modules
Run module spider varpipe-wgs to find out what environment modules are available for this application.
System Variables
- HPC_VARPIPEWGS_DIR - installation directory
- HPC_VARPIPEWGS_BIN - executable directory
- HPC_SINGULARITY_IMAGE - singularity image
Additional Information
Version currently available without references. Refer to the author's repo for specific usage: https://github.com/CDCgov/NCHHSTP-DTBE-Varpipe-WGS#start-the-singularity-image