Difference between revisions of "CryoSPARC"
Moskalenko (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|cryosparc}} |{{#vardefine:url|https://cryosparc.com/}} <!--CONFIGURATION: OPTIONAL (|1}} means it's ON...") |
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | + | CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines. | |
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| + | An individual approach to running CryoSPARC on HiPerGator is to install it in a 'standalone' mode into a personal directory tree and run it inside a SLURM job while accessing its web front-end from a browser in Open OnDemand or via an ssh tunnel and using the job resources to run the analyses or configuring cluster access to submit jobs. | ||
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| + | A group can also purchase a [[Web_Application_Hosting|PubApps instance]] and collectively use a pre-configured instance of CryoSPARC set up by RC staff that allows shared access to group's HiPerGator resources (NCU+GPU) from a single allocation (account + qos) from the UF Network (Campus + VPN). | ||
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Revision as of 18:45, 31 January 2023
Description
CryoSPARC is a state of the art scientific software platform for cryo-electron microscopy (cryo-EM) used in research and drug discovery pipelines.
An individual approach to running CryoSPARC on HiPerGator is to install it in a 'standalone' mode into a personal directory tree and run it inside a SLURM job while accessing its web front-end from a browser in Open OnDemand or via an ssh tunnel and using the job resources to run the analyses or configuring cluster access to submit jobs.
A group can also purchase a PubApps instance and collectively use a pre-configured instance of CryoSPARC set up by RC staff that allows shared access to group's HiPerGator resources (NCU+GPU) from a single allocation (account + qos) from the UF Network (Campus + VPN).