Difference between revisions of "Pplacer"
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[[Category:Biology]] | [[Category:Biology]] | ||
[[Category:Phylogenetics]] | [[Category:Phylogenetics]] | ||
− | [[Category: | + | [[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|pplacer}} | |{{#vardefine:app|pplacer}} |
Latest revision as of 15:45, 19 August 2022
Description
pplacer places query sequences on a fixed reference phylogenetic tree to maximize phylogenetic likelihood or posterior probability according to a reference alignment. Pplacer is designed to be fast, to give useful information about uncertainty, and to offer advanced visualization and downstream analysis.
Environment Modules
Run module spider pplacer
to find out what environment modules are available for this application.
System Variables
- HPC_PPLACER_DIR - installation directory
- HPC_PPLACER_BIN - installation directory