Difference between revisions of "Cytoscape"
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|{{#vardefine:app|cytoscape}} | |{{#vardefine:app|cytoscape}} | ||
Latest revision as of 14:23, 15 August 2022
Description
Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration, analysis, and visualization.
Environment Modules
Run module spider cytoscape to find out what environment modules are available for this application.
System Variables
- HPC_CYTOSCAPE_DIR - installation directory
Additional Information
This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs
Basic usage:
module load gui cytoscape launch_gui_session -e Cytoscape
Connect with xpra locally using the xpra command
xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713