Clover: Difference between revisions
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[[Category:Biology]] | [[Category:Biology]] | ||
[[Category:Genomics]] | [[Category:Genomics]] | ||
[[Category: | [[Category:Assembly]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|clover}} | |{{#vardefine:app|clover}} | ||
Latest revision as of 13:47, 15 August 2022
Description
Clover is a clustering-oriented de novo assembler for Illumina sequences, which bases on the de Bruijn graph method and utilizes a novel k-mer clustering approach from the overlap-based concept to improve the robustness with respect to sequencing error especially using large k-mers.Clover achieves a superior assembly quality in terms of corrected N50 and E-size.
Environment Modules
Run module spider clover to find out what environment modules are available for this application.
System Variables
- HPC_CLOVER_DIR - installation directory
- HPC_CLOVER_BIN - executable directory