Difference between revisions of "Minia"
Jump to navigation
Jump to search
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category: | + | [[Category:Software]][[Category:genomics]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|minia}} | |{{#vardefine:app|minia}} | ||
Latest revision as of 13:31, 15 August 2022
Description
GATB-Minia-Pipeline is a de novo assembly pipeline for Illumina data. It can assemble genomes and metagenomes.
It is multi-k, to aim for high contiguity. Similar software: MEGAHIT, metaSPAdes.
The pipeline consists of:
- Bloocoo (error correction)
- Minia 3 (contigs assembly) based on the BCALM2 (unitigs assembly) tool
- BESST (scaffolding)
Environment Modules
Run module spider minia to find out what environment modules are available for this application.
System Variables
- HPC_MINIA_DIR - installation directory
- HPC_MINIA_BIN - executable directory