Difference between revisions of "SPAdes"
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Revision as of 20:43, 12 August 2022
Description
St. Petersburg genome assembler
Environment Modules
Run module spider spades to find out what environment modules are available for this application.
System Variables
- HPC_SPADES_DIR - installation directory
- HPC_SPADES_BIN - executable directory
Additional Information
You can create a personal phyluce config in ~/.phyluce.conf. It's mostly used to set trinity or spades memory with something like
[trinity] max_memory:8G kmer_coverage:2 [spades] max_memory:6G cov_cutoff:5