Difference between revisions of "Snp2hla"
(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|snp2hla}} |{{#vardefine:url|https:...") |
|||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology | + | [[Category:Software]][[Category:Biology]][[Category:Genomics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|snp2hla}} | |{{#vardefine:app|snp2hla}} | ||
Latest revision as of 20:42, 12 August 2022
Description
SNP2HLA is a tool to impute amino acid polymorphisms and single nucleotide polymorphisms in human luekocyte antigenes (HLA) within the major histocompatibility complex (MHC) region in chromosome 6.
Environment Modules
Run module spider snp2hla to find out what environment modules are available for this application.
System Variables
- HPC_SNP2HLA_DIR - installation directory
- HPC_SNP2HLA_BIN - executable directory
Citation
If you publish research that uses snp2hla you have to cite it as follows:
If you use the Pan-Asian reference panel, please cite the following papers:
1. Pillai NE et al. "Predicting HLA alleles from high-resolution SNP data in three Southeast Asian populations." Hum Mol Genet, [epub ahead of print doi:10.1093/hmg/ddu149. 2014.]
2. Okada Y et al. (2014) Risk for ACPA-positive rheumatoid arthritis is driven by shared HLA amino acid polymorphisms in Asian and European populations. Hum Mol Genet, In press.