GDC-Client: Difference between revisions
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[[Category:Software]][[Category:Biology | [[Category:Software]][[Category:Biology]][[Category:Sequencing]][[Category:NGS]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|gdc-client}} | |{{#vardefine:app|gdc-client}} | ||
Latest revision as of 18:57, 12 August 2022
Description
The GDC provides a standard client-based mechanism in support of high performance data downloads and submission. The raw sequence files, typically stored as BAM or FASTQ, make up the bulk of data. The size for a single file can vary greatly depending on the specific analysis; However, some of the whole genome BAM files in The Cancer Genome Atlas (TCGA) reach sizes of 200-300 GB. In such cases, a high performance data download and submission client is essential.
Environment Modules
Run module spider gdc-client to find out what environment modules are available for this application.
System Variables
- HPC_GDC-CLIENT_DIR - installation directory