Difference between revisions of "Pathoscope"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pathoscope}} |{{#vardefine:url|https://github.com/PathoScope/PathoScope}} <!--CONFIGURATION: OPTIONAL...") |
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
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This is a python program designed for Species identification and strain attribution with unassembled sequencing data. | This is a python program designed for Species identification and strain attribution with unassembled sequencing data. | ||
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Revision as of 16:13, 27 June 2022
Description
This is a python program designed for Species identification and strain attribution with unassembled sequencing data.
Environment Modules
Run module spider pathoscope to find out what environment modules are available for this application.
System Variables
- HPC_PATHOSCOPE_DIR - installation directory
- HPC_PATHOSCOPE_BIN - executable directory
- HPC_PATHOSCOPE_REF - reference directory