Proovread: Difference between revisions
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Large scale high-accuracy BioPac correction through iterative short read consensus. | Large scale high-accuracy BioPac correction through iterative short read consensus. | ||
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== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{uc:{{#var:app}}}}_BIN | * HPC_{{uc:{{#var:app}}}}_BIN | ||
* HPC_{{uc:{{#var:app}}}}_CONF | * HPC_{{uc:{{#var:app}}}}_CONF | ||
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
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Revision as of 20:04, 10 June 2022
Description
Large scale high-accuracy BioPac correction through iterative short read consensus.
Environment Modules
Run module spider Proovread to find out what environment modules are available for this application.
System Variables
- HPC_PROOVREAD_DIR - installation directory
- HPC_PROOVREAD_BIN
- HPC_PROOVREAD_CONF
Additional Information
For advanced usage copy the configuration file from $HPC_PROOVREAD_CONF to your working directory and adjust as needed for the analysis at hand.
Citation
proovread: large-scale high accuracy PacBio correction through iterative short read consensus. Hackl, T.; Hedrich, R.; Schultz, J.; Förster, F. (2014).