Difference between revisions of "GCTA"

Revision as of 17:44, 10 June 2022

Description

GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits.

Environment Modules

Run module spider gcta to find out what environment modules are available for this application.

System Variables

HPC_GCTA_DIR - installation directory

Citation

If you publish research that uses gcta you have to cite it as follows:

Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. PubMed ID: 21167468

Full list of citations covering the methods used by the software is available from the project website.

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 <!--Modules-->
-==Required Modules==
+==Environment Modules==
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
 * HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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 <!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 __NOTOC____NOEDITSECTION__
-=Validation=
-* Validate 4/5/2018