Difference between revisions of "DSK"
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 17:17, 10 June 2022
Description
DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory required for a mammalian dataset) with reasonably low temporary disk usage, and supports any value of k. DSK can count k-mers of large Illumina datasets on laptops and desktop computers.
Environment Modules
Run module spider dsk to find out what environment modules are available for this application.
System Variables
- HPC_DSK_DIR - installation directory
- HPC_DSK_DOC - documentation directory
- HPC_DSK_EXE - example directory
Citation
If you publish research that uses dsk you have to cite it as follows: