Difference between revisions of "BinSanity"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:54, 10 June 2022
Description
Program implements Affinity Propagation to cluster contigs into putative genomes. BinSanity uses contig coverage as an input, while BinSanity-refine incorporates tetranucleotide frequencies, GC content, and an optional input of coverage. All relevant scripts to produce inputs for BinSanity are provided here.
Environment Modules
Run module spider binsanity to find out what environment modules are available for this application.
System Variables
- HPC_BINSANITY_DIR - installation directory
Citation
If you publish research that uses binsanity you have to cite it as follows:
Graham, E., Heidelberg, J. & Tully, B. BinSanity: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation. bioRxiv, doi:10.1101/069567 (2016).