SNeP: Difference between revisions
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== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:23, 10 June 2022
Description
SNeP is a piece of software written in C++ that performs historical Effective Population Size (Ne) trajectories estimation through Linkage Disequilibrium (LD). Calculations are based on genome-wide genotype data.
Environment Modules
Run module spider snep to find out what environment modules are available for this application.
System Variables
- HPC_SNEP_DIR - installation directory
Citation
If you publish research that uses snep you have to cite it as follows: