Difference between revisions of "Trans-ABySS"

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m (Text replacement - "#uppercase" to "uc")
 
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
 
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory

Latest revision as of 15:39, 10 June 2022

Description

transabyss website  

De novo assembly of RNAseq data using ABySS

Environment Modules

Run module spider transabyss to find out what environment modules are available for this application.

System Variables

  • HPC_TRANSABYSS_DIR - installation directory




Citation

If you publish research that uses transabyss you have to cite it as follows:

Robertson, G., et al. 2010. De novo assembly and analysis of RNA-seq data. Nature Methods 7, 909-912(2010)