Difference between revisions of "CNVkit"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 15:06, 10 June 2022
Description
A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing.
Environment Modules
Run module spider cnvkit to find out what environment modules are available for this application.
System Variables
- HPC_CNVKIT_DIR - installation directory
- HPC_CNVKIT_BIN - executable directory