Difference between revisions of "DeepMReye"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|DeepMReye}} |{{#vardefine:url|https://github.com/DeepMReye/DeepMReye}} <!--...") |
|||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:bioinformatics]] | + | [[Category:Software]][[Category:bioinformatics]][[Category:Library]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|DeepMReye}} | |{{#vardefine:app|DeepMReye}} | ||
Revision as of 15:35, 6 June 2022
Description
This Jupyter Notebook provides a step-by-step walkthrough of the code. It includes eyeball coregistration, voxel extraction, model training and test as well as basic performance measures. Alternatively, here is a Colab Notebook.
This Data Repository includes exemplary data for model training and test, source data of all paper figures as well as pre-trained model weights.
Moreover, here are additional User Recommendations as well as a Frequently-Asked-Questions (FAQ) page. If you have other questions, please reach out to us.
Environment Modules
Run module spider DeepMReye to find out what environment modules are available for this application.
System Variables
- HPC_DEEPMREYE_DIR - installation directory
- HPC_DEEPMREYE_BIN - executable directory