Difference between revisions of "GTAHunter"
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 16:39, 27 May 2022
Description
GTA_Hunter is a 'support-vector machine' (SVM) classifier that distinguishes gene transfer agent (GTA) genes from their viral homologs.
The classifier was developed to detect GTA genes that are homologous to 11 of the genes that encode the GTA in Rhodobacter capsulatus (RcGTA) (see Kogay et al, 2019). However, the classifier can be trained to detect other RcGTA genes, other GTAs, or even other virus-like elements, as long as there is training data available and the two classes have distinct amino acid composition.
Environment Modules
Run module spider GTAHunter to find out what environment modules are available for this application.
System Variables
- HPC_GTAHUNTER_DIR - installation directory
- HPC_GTAHUNTER_BIN - executable directory