Difference between revisions of "Ggsashimi"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ggsashimi}} |{{#vardefine:url|https://github.com/guigolab/ggsashimi}} <!--CO...") |
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|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | [https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1006360 Garrido-Martín, D., Palumbo, E., Guigó, R., & Breschi, A. (2018). ggsashimi: Sashimi plot revised for browser-and annotation-independent splicing visualization. PLoS computational biology, 14(8), e1006360.] | |
|}} | |}} | ||
Latest revision as of 16:38, 27 May 2022
Description
Command-line tool for the visualization of splicing events across multiple samples
Environment Modules
Run module spider ggsashimi to find out what environment modules are available for this application.
System Variables
- HPC_GGSASHIMI_DIR - installation directory
- HPC_GGSASHIMI_BIN - executable directory
Citation
If you publish research that uses ggsashimi you have to cite it as follows: