Ciriquant: Difference between revisions
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{{#if: {{#var: exe}}1|==Usage Example== | {{#if: {{#var: exe}}1|==Usage Example== | ||
$ module load ciriquant/1.1.2 | <code>$ module load ciriquant/1.1.2 | ||
$ CIRIquant -help | |||
$ CIRIquant -help</code> | |||
|}} | |}} | ||
Latest revision as of 15:00, 30 March 2022
Description
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
Environment Modules
Run module spider ciriquant to find out what environment modules are available for this application.
System Variables
- HPC_CIRIQUANT_DIR - installation directory
- HPC_CIRIQUANT_BIN - executable directory
Usage Example
$ module load ciriquant/1.1.2
$ CIRIquant -help
Citation
If you publish research that uses ciriquant you have to cite it as follows:
Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9