Ciriquant: Difference between revisions
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Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ciriquant}} |{{#vardefine:url|https://ciri-cookbook.readthedocs.io/en/latest..." |
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{{#if: {{#var: exe}}|== | {{#if: {{#var: exe}}|==Usage Example== | ||
$ module load ciriquant/1.1.2 | |||
$ CIRIquant -help | |||
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Revision as of 14:59, 30 March 2022
Description
CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data
Environment Modules
Run module spider ciriquant to find out what environment modules are available for this application.
System Variables
- HPC_CIRIQUANT_DIR - installation directory
- HPC_CIRIQUANT_BIN - executable directory
Citation
If you publish research that uses ciriquant you have to cite it as follows:
Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) doi:10.1038/s41467-019-13840-9