Difference between revisions of "Hmmer2go"
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hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa | hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa | ||
Revision as of 15:22, 16 March 2022
Description
HMMER2GO is a command line application to map DNA sequences, typically transcripts, to Gene Ontology based on the similarity of the query sequences to curated HMM models for protein families represented in Pfam.
Environment Modules
Run module spider hmmer2go to find out what environment modules are available for this application.
System Variables
- HPC_SINGULARITY_IMAGE - singularity directory
Usage examples
hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa