Difference between revisions of "Trycycler"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|trycycler}} |{{#vardefine:url|https://github.com/rrwick/Trycycler}} <!--CONF...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 18:13, 22 July 2021
Description
Trycycler is a tool for generating consensus long-read assemblies for bacterial genomes. I.e. if you have multiple long-read assemblies for the same isolate, Trycycler can combine them into a single assembly that is better than any of your inputs.
Environment Modules
Run module spider trycycler to find out what environment modules are available for this application.
System Variables
- HPC_TRYCYCLER_DIR - installation directory
- HPC_TRYCYCLER_BIN - executable directory
Citation
If you publish research that uses trycycler you have to cite it as follows: