Difference between revisions of "MGERT"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mgert}} |{{#vardefine:url|https://github.com/andrewgull/MGERT}} <!--CONFIGUR...") |
|||
| Line 10: | Line 10: | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
Latest revision as of 14:20, 15 September 2020
Description
MGERT is a computational pipeline for easy retrieving of MGE's coding sequences of a particular family from genome assemblies. MGERT utilizes several established bioinformatic tools combined into single pipeline which hides different technical quirks from an inexperienced user.
Environment Modules
Run module spider mgert to find out what environment modules are available for this application.
System Variables
- HPC_MGERT_DIR - installation directory
- HPC_MGERT_BIN - executable directory
Citation
If you publish research that uses mgert you have to cite it as follows: