Difference between revisions of "NanoCount"
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Latest revision as of 20:28, 14 May 2020
Description
[/apps/nanocount/0.2.1/bin nanocount website]
NanoCount estimates transcripts abundance from Oxford Nanopore direct-RNA sequencing datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Environment Modules
Run module spider nanocount to find out what environment modules are available for this application.
System Variables
- HPC_NANOCOUNT_DIR - installation directory
- HPC_NANOCOUNT_BIN - executable directory
Citation
If you publish research that uses nanocount you have to cite it as follows:
Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo.