Difference between revisions of "Deprecation"
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| Line 19: | Line 19: | ||
* libsvm - 3.12 | * libsvm - 3.12 | ||
* lsc - 0.3.1, 0.3, 1alpha, 1beta, 2.0 | * lsc - 0.3.1, 0.3, 1alpha, 1beta, 2.0 | ||
| + | * maker - 2.10, 2.25b | ||
* metamos - 1.3.1 | * metamos - 1.3.1 | ||
* miso - 0.4.4, 0.4.9 | * miso - 0.4.4, 0.4.9 | ||
Revision as of 19:25, 26 March 2020
Apps and Databases to Remove
A list of software and the databases that are going to be deprecated. The modules are removed and the software is put into the REMOVE directories to be removed 6 months from being added to this page.
- 2020-04-01
- tophat - 2.0.8b, 2.0.1, 2.0.13, 2.0.11, 1.4.1, 1.3.3b, 1.3.0
- MATS - 3.0.4.beta, 3.0.6.beta, 3.0.8
- afni - 2011_12_21_1014, 2013_05_31, 2013_11_24-openmp
- agalma - 0.2.1
- amuse - 6.0
- arc - 20130715
- bayesrate - 1.3.43
- beta - 1.0.5
- cgat - 0.2.3
- cufflinks - 1.3.0, 2.0.0, 2.0.2
- emirge - 20130727
- eval - 2.2.8
- htseq - 0.5.3p3, 0.6.1p1
- libsvm - 3.12
- lsc - 0.3.1, 0.3, 1alpha, 1beta, 2.0
- maker - 2.10, 2.25b
- metamos - 1.3.1
- miso - 0.4.4, 0.4.9
- modeller - 9.11, 9.13
- msmbuilder - 2.5.1
- nexuscl - 2.1.18
- ngsutils - 20130722, 20150206
- partitionfinder - 1.0.1, 2.0.0-pre8, 2.0.0-pre10, 2.0.0-pre11
- phycas - 1.2.0
- scons - 2.3.0
- spades - 2.5.0, 2.5.1 - More will be removed in the future some are loaded as dependencies
- spanki - 0.4.1, 0.4.3, 0.5.0
- sparcc - 201402
- spimap - 1.1, .1.1.git20120501
- treefix - 1.1.10, 1.1.7
- vcflib - 20121207, 20141119
- velvet - 1.2.06, 1.2.07
- wgs - 7.0.1.23-pacbio, 7.0.1.23, 8.0.r4443-pacbio, 8.0.r4443
- idba-ud - 1.0.9, 1.1.0
- 2020-03-01
- homer - 20130529, 4.5, 4.6, 4.7, databases
- fgenesb - 2012, databases
- picrust - 1.0.0-gx
- qiime - 1.5.0, 1.6.0, 1.8.0, 1.9.0
- iprscan - 4.8, 5.0rc6, 5.19-58.0, 5.24-63.0, 5.25-64.0, 5.26-65.0, 5.29-68.0.bak, database