Difference between revisions of "USEARCH"
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(Created page with "Category:SoftwareCategory:biologyCategory:bioinformaticsCategory:alignmentCategory:sequence analysis {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|use...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:29, 6 December 2019
Description
USEARCH is a unique sequence analysis tool with thousands of users world-wide. USEARCH offers search and clustering algorithms that are often orders of magnitude faster than BLAST. USEARCH combines many different algorithms into a single package with outstanding documentation and support. This cuts your learning curve, reduces the number of steps you need to take for a given task, and slashes compute times. USEARCH will encourage you to explore your data, enabling new insights and suggesting new analyses that you might not have tried with slower tools.
Environment Modules
Run module spider usearch to find out what environment modules are available for this application.
System Variables
- HPC_USEARCH_DIR - installation directory
- HPC_USEARCH_BIN - executable directory