YASRA: Difference between revisions
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Created page with "Category:Software Category:biologyCategory:bioinformaticsCategory:ngsCategory:sequencing {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|yasra}} |{{#var..." |
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==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:29, 6 December 2019
Description
yasra website
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short reads using a reference genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes makes use of LASTZ (Harris et al), a pairwise sequence aligner compatible with BLASTZ. Special scoring sets were derived to improve the performance, both in runtime and quality for 454 and Illumina sequence reads.
Required Modules
Serial
- yasra
System Variables
- HPC_YASRA_DIR - installation directory
- HPC_YASRA_BIN - executable directory