Difference between revisions of "Wise"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documents directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_MAN - manpages directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:29, 6 December 2019
Description
Wise2 is a package focused on comparisons of biopolymers, commonly DNA sequence and protein sequence. There are many other packages which do this, probably the best known being BLAST package (from NCBI) and the FASTA package (from Bill Pearson). There are other packages, such as the HMMER package (Sean Eddy) or SAM package (UC Santa Cruz) focused on hidden Markov models (HMMs) of biopolymers.
Environment Modules
Run module spider wise to find out what environment modules are available for this application.
System Variables
- HPC_WISE_DIR - installation directory
- HPC_WISE_BIN - executable directory
- HPC_WISE_DOC - documents directory
- HPC_WISE_MAN - manpages directory