Difference between revisions of "Rrnaselector"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:24, 6 December 2019
Description
This JAVA program is designed to be used for selecting prokaryotic rRNA sequences from metagenomic and metatrancriptomic shotgun libraries. The rRNASelector selects both bacterial and archaeal rRNA genes (5S, 16S and 23S). The remaining sequences can be used for non-rRNA-based bioinformatic analysis (e.g. homology search against protein databases). Additionally, for further rRNA-based analysis, the resultant sequences are trimmed to contain only rRNA coding regions.
Environment Modules
Run module spider rrnaselector to find out what environment modules are available for this application.
System Variables
- HPC_RRNASELECTOR_DIR - installation directory
- HPC_RRNASELECTOR_BIN - executable directory