Difference between revisions of "SequelQC"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|sequelqc}} |{{#vardefine:url|https://github.com/ISUgenomics/SequelQC}} <!--C...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:24, 6 December 2019
Description
SequelQC is a quality check program specifically for the PacBio Sequel platform that quickly processes raw sequence data from multiple SMRTcells producing multiple statistics and publication quality plots describing the quality of the data including N50, read length and count statistics, PSR, and ZOR.
Environment Modules
Run module spider sequelqc to find out what environment modules are available for this application.
System Variables
- HPC_SEQUELQC_DIR - installation directory
- HPC_SEQUELQC_BIN - executable directory