Difference between revisions of "SMC++"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
 
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{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Revision as of 21:24, 6 December 2019

Description

smcpp website  

SMC++ is a program for estimating the size history of populations from whole genome sequence data.

Required Modules

Serial

  • gcc/5.2.0
  • smcpp

System Variables

  • HPC_SMCPP_DIR - installation directory
  • HPC_SMCPP_BIN - executable directory




Citation

If you publish research that uses smcpp you have to cite it as follows:

J. Terhorst, J. A. Kamm, and Y. S. Song. Robust and scalable inference of population history from hundreds of unphased whole genomes. Nature Genetics, 49(2):303–309, 2017.