Difference between revisions of "PDA"
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(Created page with "Category:SoftwareCategory:biologyCategory:phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|pda}} |{{#vardefine:url|http://www.cibiv.at/software/pda...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_EXE - examples directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:23, 6 December 2019
Description
PDA - Phylogenetic Diversity Analyzer is a software tool for Biodiversity Analysis and Conservation Prioritization Problems
Environment Modules
Run module spider pda to find out what environment modules are available for this application.
System Variables
- HPC_PDA_DIR - installation directory
- HPC_PDA_BIN - executable directory
- HPC_PDA_EXE - examples directory
Citation
If you publish research that uses pda you have to cite it as follows:
O. Chernomor, B.Q. Minh, F. Forest, S. Klaere, T. Ingram, M. Henzinger, and A. von Haeseler (2015) Split diversity in constrained conservation prioritization using integer linear programming. Methods Ecol. Evol., 6, 83-91. DOI: 10.1111/2041-210X.12299