Difference between revisions of "MetaCompare"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|metacompare}} |{{#vardefine:url|https://github.com/minoh0201/MetaCompare}} <...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DB - database directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
MetaCompare is a computational pipeline for prioritizing resistome risk by estimating the potential for ARGs to be disseminated into human pathogens from a given environmental sample based on metagenomic sequencing data.
Environment Modules
Run module spider metacompare to find out what environment modules are available for this application.
System Variables
- HPC_METACOMPARE_DIR - installation directory
- HPC_METACOMPARE_BIN - executable directory
- HPC_METACOMPARE_DB - database directory
Citation
If you publish research that uses metacompare you have to cite it as follows: