Difference between revisions of "MPBoot"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mpboot}} |{{#vardefine:url|https://github.com/diepthihoa...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| Line 24: | Line 24: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentantion directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
MPBoot is an efficient program for parsimony analysis. The program can reconstruct maximum parsimony trees for large DNA and protein sequence alignments. More importantly, it implements the method MPBoot for approximating maximum parsimony bootstrap. The method was inspired by the ultrafast bootstrap approximation for maximum likelihood
Environment Modules
Run module spider mpboot to find out what environment modules are available for this application.
System Variables
- HPC_MPBOOT_DIR - installation directory
- HPC_MPBOOT_BIN - executable directory
- HPC_MPBOOT_DOC - documentantion directory