Difference between revisions of "LobSTR"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 36: | Line 36: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
* LOBSTR_INDEXES - indexes directory | * LOBSTR_INDEXES - indexes directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:21, 6 December 2019
Description
lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.
Required Modules
Serial
- gcc/5.2.0
- lobstr
System Variables
- HPC_LOBSTR_DIR - installation directory
- HPC_LOBSTR_BIN - executable directory
- LOBSTR_INDEXES - indexes directory