Difference between revisions of "GUAVA"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:20, 6 December 2019
Description
GUAVA is a standalone GUI tool for the processing, analysis, and visualization of ATAC-seq data from raw sequencing reads to ATAC-seq signals. GUAVA can compare ATAC-seq signals from two conditions to identify genomic loci with differentially enriched ATAC-seq signals. Furthermore, GUAVA provides results on gene ontology and pathways analysis. Since using GUAVA requires only several clicks and no learning curve, it will help novice bioinformatics researchers and biologist with minimal computer skills to analyze ATAC-seq data. Therefore, we believe that GUAVA is a powerful and time saving tool for ATAC-seq data analysis. The GUAVA setup contains a script to configure and install dependencies which facilitates the GUAVA installation. GUAVA works on Linux and Mac OS.
Environment Modules
Run module spider guava to find out what environment modules are available for this application.
System Variables
- HPC_GUAVA_DIR - installation directory
- HPC_GUAVA_BIN - executable directory