Delly: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|delly}} |{{#vardefine:url|https://github.com/dellytools/..." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:20, 6 December 2019
Description
Delly2 is an integrated structural variant prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome. Structural variants can be visualized using Delly-maze and Delly-suave.
Required Modules
Serial
- delly
System Variables
- HPC_DELLY_DIR - installation directory
- HPC_DELLY_BIN - executable directory