Difference between revisions of "DSSP"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 32: | Line 32: | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Additional--> | <!--Additional--> | ||
Revision as of 21:20, 6 December 2019
Description
The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.
Required Modules
Serial (with Intel compiler)
- intel/2013
- {{#lowercase:DSSP}}
Serial (with GCC)
- gcc/4.7.2
- {{#lowercase:DSSP}}
System Variables
- HPC_DSSP_DIR - installation directory
- HPC_DSSP_BIN - executable directory
Validation
- Validated 4/5/2018