Difference between revisions of "BinSanity"
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Revision as of 21:18, 6 December 2019
Description
Program implements Affinity Propagation to cluster contigs into putative genomes. BinSanity uses contig coverage as an input, while BinSanity-refine incorporates tetranucleotide frequencies, GC content, and an optional input of coverage. All relevant scripts to produce inputs for BinSanity are provided here.
Required Modules
Serial
- binsanity
System Variables
- HPC_BINSANITY_DIR - installation directory
Citation
If you publish research that uses binsanity you have to cite it as follows:
Graham, E., Heidelberg, J. & Tully, B. BinSanity: Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation. bioRxiv, doi:10.1101/069567 (2016).