Difference between revisions of "BPGA"
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(Created page with "Category:SoftwareCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bpga}} |{{#vardefine:url|http://www.iicb.res.in/bpga/index.html}}...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:13, 6 December 2019
Description
BPGA is an ultra-fast software package that provides comprehensive pan genome analysis of microorganisms. In addition to all types of routine pan genomic analyses (Pan genome Profiles, Pan/Core Phylogeny etc.), BPGA includes a number of novel downstream analysis features like Exclusive Gene Family Analysis, Atypical GC Content Analysis, Subset Analysis, MLST based on housekeeping genes and KEGG Distribution etc.
Environment Modules
Run module spider bpga to find out what environment modules are available for this application.
System Variables
- HPC_BPGA_DIR - installation directory