Amphora2: Difference between revisions
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Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_EXE - test data directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_TAX- taxonomy data directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_TREE - tree data directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:11, 6 December 2019
Description
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
AMPHORA2 is free software: you may redistribute it and/or modify its under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
Required Modules
Serial
- amphora2
System Variables
- HPC_AMPHORA2_DIR - installation directory
- HPC_AMPHORA2_BIN - executable directory
- HPC_AMPHORA2_DOC - documentation directory
- HPC_AMPHORA2_EXE - test data directory
- HPC_AMPHORA2_TAX- taxonomy data directory
- HPC_AMPHORA2_TREE - tree data directory
Citation
If you publish research that uses amphora2 you have to cite it as follows: