Genesum: Difference between revisions
Jump to navigation
Jump to search
Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genesum}} |{{#vardefine:url|https://github.com/Kingsford-Grou..." |
No edit summary |
||
| Line 25: | Line 25: | ||
==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{#uppercase:{{#var:app}}}}_BIN - execution directory | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 20:48, 21 February 2018
Description
This is a tool to create gene-level summaries of transcript expression estimates. You provide the tool with an annotation file (in GTF/GFF format) and a set of transcript-level estimates, and it aggregates these expression estimates to the gene-level.
Environment Modules
Run module spider genesum to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:genesum}}_DIR - installation directory
- HPC_{{#uppercase:genesum}}_BIN - execution directory