SHARCGS: Difference between revisions
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Created page with "Category:SoftwareCategory:biologyCategory:NGSCategory:de novo assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|sharcgs}} |{{#vardefine:url|http://sh..." |
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{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
If you use the programs or Helicobacter Solexa data for a publication please cite: | If you use the programs or Helicobacter Solexa data for a publication please cite: | ||
Dohm JC, Lottaz C, Borodina T, Himmelbauer H | Dohm JC, Lottaz C, Borodina T, Himmelbauer H SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Research 2007 17: 1697-1706. | ||
If you use Beta vulgaris Solexa data for a publication please cite: | If you use Beta vulgaris Solexa data for a publication please cite: | ||
Dohm JC, Lottaz C, Borodina T, Himmelbauer H | Dohm JC, Lottaz C, Borodina T, Himmelbauer H Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 2008 Jul 26.[Epub ahead of print] | ||
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Revision as of 15:28, 7 February 2018
Description
SHort-read Assembler based on Robust Contig-extension for Genomic Sequencing.
Environment Modules
Run module spider sharcgs to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:sharcgs}}_DIR - installation directory
- HPC_{{#uppercase:sharcgs}}_DATA - Sample data directory
Citation
If you use the programs or Helicobacter Solexa data for a publication please cite:
Dohm JC, Lottaz C, Borodina T, Himmelbauer H SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing. Genome Research 2007 17: 1697-1706.
If you use Beta vulgaris Solexa data for a publication please cite:
Dohm JC, Lottaz C, Borodina T, Himmelbauer H Substantial biases in ultra-short read data sets from high-throughput DNA sequencing. Nucleic Acids Res. 2008 Jul 26.[Epub ahead of print]